@prefix ECO: . @prefix IAO: . @prefix asb: . @prefix cito: . @prefix dcat: . @prefix dct: . @prefix doco: . @prefix fabio: . @prefix indicium: . @prefix linkml: . @prefix oa: . @prefix owl: . @prefix pav: . @prefix rdf: . @prefix rdfs: . @prefix sepio: . @prefix skos: . @prefix sssom: . @prefix xsd: . indicium:IndiciumDocument a owl:Class ; rdfs:label "IndiciumDocument" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:evidences ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:citation_links ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:claim_links ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:scripts ], [ a owl:Restriction ; owl:allValuesFrom indicium:CitationLink ; owl:onProperty indicium:citation_links ], [ a owl:Restriction ; owl:allValuesFrom indicium:Script ; owl:onProperty indicium:scripts ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:sssom_mappings ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:claims ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:figures ], [ a owl:Restriction ; owl:allValuesFrom indicium:Claim ; owl:onProperty indicium:claims ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:datasets ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:software_entities ], [ a owl:Restriction ; owl:allValuesFrom indicium:Evidence ; owl:onProperty indicium:evidences ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:sources ], [ a owl:Restriction ; owl:allValuesFrom indicium:ClaimLink ; owl:onProperty indicium:claim_links ], [ a owl:Restriction ; owl:allValuesFrom indicium:DataAsset ; owl:onProperty indicium:datasets ], [ a owl:Restriction ; owl:allValuesFrom indicium:SSSOMMapping ; owl:onProperty indicium:sssom_mappings ], [ a owl:Restriction ; owl:allValuesFrom indicium:Source ; owl:onProperty indicium:sources ], [ a owl:Restriction ; owl:allValuesFrom indicium:Figure ; owl:onProperty indicium:figures ], [ a owl:Restriction ; owl:allValuesFrom indicium:SoftwareEntity ; owl:onProperty indicium:software_entities ] ; skos:definition "Top-level container for a serialisable Indicium document. Holds all entity collections; enables full round-trip JSON/YAML/RDF I/O." ; skos:inScheme . indicium:asserts a owl:ObjectProperty ; rdfs:label "asserts" ; rdfs:range indicium:Claim ; skos:definition "A claim relied on by a downstream skill or other consuming resource. This local predicate describes reliance, not authorship or a SEPIO assertion that puts a proposition forth as true. It is available to downstream JSON-LD extensions without introducing a core Skill class." ; skos:inScheme . ECO:0000034 a owl:Class ; rdfs:label "speculation" ; rdfs:subClassOf indicium:EvidenceType . ECO:0000204 a owl:Class ; rdfs:label "author_statement" ; rdfs:subClassOf indicium:EcoCodeAsbSubset ; skos:definition "Stated by authors but not directly quoted." . ECO:0000213 a owl:Class ; rdfs:label "combinatorial_evidence" ; rdfs:subClassOf indicium:EcoCodeAsbSubset ; skos:definition "Multi-method aggregate (e.g. spectral + retention time)." . ECO:0000251 a owl:Class ; rdfs:label "computational_evidence" ; rdfs:subClassOf indicium:EcoCodeAsbSubset ; skos:definition "Derived from code execution or pipeline output." . ECO:0000305 a owl:Class ; rdfs:label "expert_curation" ; rdfs:subClassOf indicium:EcoCodeAsbSubset ; skos:definition "Hand-curated by a domain expert." . ECO:0000361 a owl:Class ; rdfs:label "inference" ; rdfs:subClassOf indicium:EvidenceType . IAO:0000311 a owl:Class ; rdfs:label "text" ; rdfs:subClassOf indicium:SourceType . IAO:0000536 a owl:Class ; rdfs:label "image" ; rdfs:subClassOf indicium:SourceType . cito:agreesWith a owl:Class ; rdfs:label "agreesWith" ; rdfs:subClassOf indicium:LinkType . cito:citesForInformation a owl:Class ; rdfs:label "citesForInformation" ; rdfs:subClassOf indicium:LinkType . cito:contradicts a owl:Class ; rdfs:label "contradicts" ; rdfs:subClassOf indicium:LinkType . cito:corrects a owl:Class ; rdfs:label "corrects" ; rdfs:subClassOf indicium:LinkType . cito:disagreesWith a owl:Class ; rdfs:label "disagreesWith" ; rdfs:subClassOf indicium:LinkType . cito:disputes a owl:Class ; rdfs:label "disputes" ; rdfs:subClassOf indicium:LinkType . cito:extends a owl:Class ; rdfs:label "extends" ; rdfs:subClassOf indicium:LinkType . cito:qualifies a owl:Class ; rdfs:label "qualifies" ; rdfs:subClassOf indicium:LinkType . cito:refines a owl:Class ; rdfs:label "refines" ; rdfs:subClassOf indicium:LinkType . cito:supports a owl:Class ; rdfs:label "supports" ; rdfs:subClassOf indicium:LinkType . cito:updates a owl:Class ; rdfs:label "updates" ; rdfs:subClassOf indicium:LinkType . cito:usesDataFrom a owl:Class ; rdfs:label "usesDataFrom" ; rdfs:subClassOf indicium:LinkType . cito:usesMethodIn a owl:Class ; rdfs:label "usesMethodIn" ; rdfs:subClassOf indicium:LinkType . doco:Table a owl:Class ; rdfs:label "table" ; rdfs:subClassOf indicium:SourceType . fabio:DataPlot a owl:Class ; rdfs:label "data_plot" ; rdfs:subClassOf indicium:FigureType . fabio:Diagram a owl:Class ; rdfs:label "diagram" ; rdfs:subClassOf indicium:FigureType . fabio:Figure a owl:Class ; rdfs:label "generic" ; rdfs:subClassOf indicium:FigureType . fabio:Flowchart a owl:Class ; rdfs:label "flowchart" ; rdfs:subClassOf indicium:FigureType . fabio:Graph a owl:Class ; rdfs:label "graph" ; rdfs:subClassOf indicium:FigureType . fabio:Photograph a owl:Class ; rdfs:label "photograph" ; rdfs:subClassOf indicium:FigureType . fabio:Plate a owl:Class ; rdfs:label "plate" ; rdfs:subClassOf indicium:FigureType . fabio:Table a owl:Class ; rdfs:label "table" ; rdfs:subClassOf indicium:FigureType . indicium:CitationLink a owl:Class ; rdfs:label "CitationLink" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:of_source ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:for_claim ], [ a owl:Restriction ; owl:allValuesFrom indicium:Source ; owl:onProperty indicium:of_source ], [ a owl:Restriction ; owl:allValuesFrom indicium:Claim ; owl:onProperty indicium:for_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:of_source ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:for_claim ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:link_type ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:link_type ], [ a owl:Restriction ; owl:allValuesFrom indicium:LinkType ; owl:onProperty indicium:link_type ] ; skos:definition "A typed link (CiTO) from a Source to a Claim." ; skos:inScheme . indicium:ClaimLink a owl:Class ; rdfs:label "ClaimLink" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:link_type ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:from_claim ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:to_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:link_type ], [ a owl:Restriction ; owl:allValuesFrom indicium:Claim ; owl:onProperty indicium:from_claim ], [ a owl:Restriction ; owl:allValuesFrom indicium:Claim ; owl:onProperty indicium:to_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:from_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:to_claim ], [ a owl:Restriction ; owl:allValuesFrom indicium:LinkType ; owl:onProperty indicium:link_type ] ; skos:definition "A typed semantic link between two Claims using CiTO predicates. Enables contradiction detection, argument graphs, and claim ledger navigation." ; skos:inScheme . a owl:Class ; rdfs:label "draft" ; rdfs:subClassOf indicium:ClaimStatus . a owl:Class ; rdfs:label "published" ; rdfs:subClassOf indicium:ClaimStatus . a owl:Class ; rdfs:label "retracted" ; rdfs:subClassOf indicium:ClaimStatus . a owl:Class ; rdfs:label "superseded" ; rdfs:subClassOf indicium:ClaimStatus . a owl:Class ; rdfs:label "verified" ; rdfs:subClassOf indicium:ClaimStatus . a owl:Class ; rdfs:label "explicit" ; rdfs:subClassOf indicium:ClaimType . a owl:Class ; rdfs:label "implicit" ; rdfs:subClassOf indicium:ClaimType . indicium:Evidence a owl:Class ; rdfs:label "Evidence" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:of_source ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:decision_context ], [ a owl:Restriction ; owl:allValuesFrom indicium:EcoCodeAsbSubset ; owl:onProperty indicium:eco_code ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:for_claim ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:eco_code ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:of_figure ], [ a owl:Restriction ; owl:allValuesFrom indicium:Source ; owl:onProperty indicium:of_source ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:evidence_type ], [ a owl:Restriction ; owl:allValuesFrom indicium:Claim ; owl:onProperty indicium:for_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:of_source ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:asserted_by ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:text_selector ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:for_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:eco_code ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:of_figure ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:confidence ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:evidence_type ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:quote ], [ a owl:Restriction ; owl:allValuesFrom indicium:EvidenceType ; owl:onProperty indicium:evidence_type ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:of_script ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:quote_exact ], [ a owl:Restriction ; owl:allValuesFrom indicium:FragmentSelector ; owl:onProperty indicium:fragment_selector ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:asserted_by ], [ a owl:Restriction ; owl:allValuesFrom indicium:Script ; owl:onProperty indicium:of_script ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:supports_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:asserted_by ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:source_type ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:text_selector ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:workflow_coupling ], [ a owl:Restriction ; owl:allValuesFrom indicium:WorkflowCoupling ; owl:onProperty indicium:workflow_coupling ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:confidence ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:quote ], [ a owl:Restriction ; owl:allValuesFrom indicium:Claim ; owl:onProperty indicium:supports_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:quote ], [ a owl:Restriction ; owl:allValuesFrom xsd:float ; owl:onProperty indicium:confidence ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:fragment_selector ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:quote_exact ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:of_script ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:quote_exact ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:of_dataset ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:supports_claim ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:source_type ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:quote_location ], [ a owl:Restriction ; owl:allValuesFrom [ a rdfs:Datatype ; owl:onDatatype xsd:string ; owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z_][a-zA-Z0-9_]*\\.[a-zA-Z_][a-zA-Z0-9_]*$" ] ) ] ; owl:onProperty indicium:decision_context ], [ a owl:Restriction ; owl:allValuesFrom indicium:SourceType ; owl:onProperty indicium:source_type ], [ a owl:Restriction ; owl:allValuesFrom indicium:Figure ; owl:onProperty indicium:of_figure ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:workflow_coupling ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:fragment_selector ], [ a owl:Restriction ; owl:allValuesFrom indicium:TextQuoteSelector ; owl:onProperty indicium:text_selector ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:of_dataset ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:quote_location ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:quote_location ], [ a owl:Restriction ; owl:allValuesFrom indicium:DataAsset ; owl:onProperty indicium:of_dataset ] ; skos:definition "An evidence line linking a Claim to a Source (SEPIO EvidenceLine)." ; skos:exactMatch sepio:0000002 ; skos:inScheme . indicium:SSSOMMapping a owl:Class ; rdfs:label "SSSOMMapping" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:derived_from ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:subject_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:subject_id ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:derived_from ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:confidence ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:subject_id ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:predicate_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:predicate_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:confidence ], [ a owl:Restriction ; owl:allValuesFrom xsd:float ; owl:onProperty indicium:confidence ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:subject_label ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:predicate_id ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:object_id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:object_label ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:object_id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:mapping_justification ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:subject_label ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:subject_label ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:object_label ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:mapping_justification ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:object_label ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:object_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:mapping_justification ] ; skos:definition "A term mapping in SSSOM form (Simple Standard for Sharing Ontological Mappings) carried by an Indicium document." ; skos:exactMatch sssom:Mapping ; skos:inScheme . indicium:SoftwareEntity a owl:Class ; rdfs:label "SoftwareEntity" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:bio_tools_id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:edam_topics ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:bio_tools_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:bio_tools_id ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:edam_operation ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:version ], [ a owl:Restriction ; owl:allValuesFrom xsd:anyURI ; owl:onProperty indicium:edam_topics ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:canonical_url ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:edam_operation ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:version ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:version ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:canonical_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:anyURI ; owl:onProperty indicium:edam_operation ], [ a owl:Restriction ; owl:allValuesFrom xsd:anyURI ; owl:onProperty indicium:canonical_url ] ; skos:definition "A software tool / package with stable identity, EDAM annotations, and optional bio.tools cross-reference. Distinct from `Script` (in-paper code artefact): SoftwareEntity is a globally identified tool (e.g. MZmine, OpenMS) that multiple papers may cite." ; skos:exactMatch fabio:ComputerProgram ; skos:inScheme . a owl:Class ; rdfs:label "analysis" ; rdfs:subClassOf indicium:SourceTaskKind ; skos:definition "Claim arises from a new analysis of the source's data/artefacts, beyond restating the paper." . a owl:Class ; rdfs:label "component_reconstruction" ; rdfs:subClassOf indicium:SourceTaskKind ; skos:definition "Claim concerns partial re-implementation of a specific component/step of the source's method." . a owl:Class ; rdfs:label "extension" ; rdfs:subClassOf indicium:SourceTaskKind ; skos:definition "Claim extends the source paper's task — new data, methods, or conclusions beyond original scope." . a owl:Class ; rdfs:label "reproduction" ; rdfs:subClassOf indicium:SourceTaskKind ; skos:definition "Claim re-derives the source paper's finding from the same or equivalent data and method." . a owl:Class ; rdfs:label "activates" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "causes" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "consistent_with" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "correlates_with" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "decreases" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "enables" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "enhances" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "has_property" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "increases" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "inhibits" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "interacts_with" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "is_a" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "is_associated_with" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "is_part_of" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "predicts" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "prevents" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "produces" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "reduces" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "requires" ; rdfs:subClassOf indicium:SuperPatternQualifier . a owl:Class ; rdfs:label "treats" ; rdfs:subClassOf indicium:SuperPatternQualifier . indicium:TextQuoteSelector a owl:Class ; rdfs:label "TextQuoteSelector" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:tqs_suffix ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:tqs_suffix ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:tqs_suffix ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:tqs_exact ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:tqs_exact ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:tqs_exact ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:tqs_prefix ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:tqs_prefix ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:tqs_prefix ] ; skos:definition "W3C TextQuoteSelector. Exact text + optional disambiguation context. Matches ASTRA's existing oa:TextQuoteSelector alignment." ; skos:exactMatch oa:TextQuoteSelector ; skos:inScheme . a owl:Class ; rdfs:label "ad_hoc" ; rdfs:subClassOf indicium:WorkflowCoupling ; skos:definition "No formal coupling structure." . a owl:Class ; rdfs:label "loose" ; rdfs:subClassOf indicium:WorkflowCoupling ; skos:definition "File/API communication; individually reproducible." . a owl:Class ; rdfs:label "tight" ; rdfs:subClassOf indicium:WorkflowCoupling ; skos:definition "Shared in-memory state; not independently reproducible." . a owl:Class ; rdfs:label "unknown" ; rdfs:subClassOf indicium:WorkflowCoupling ; skos:definition "Not characterised." . indicium:authors a owl:DatatypeProperty ; rdfs:label "authors" ; skos:inScheme . indicium:citation_links a owl:ObjectProperty ; rdfs:label "citation_links" ; rdfs:range indicium:CitationLink ; skos:definition "All CitationLink edges in this document." ; skos:inScheme . indicium:claim_links a owl:ObjectProperty ; rdfs:label "claim_links" ; rdfs:range indicium:ClaimLink ; skos:definition "All ClaimLink edges in this document." ; skos:inScheme . indicium:claims a owl:ObjectProperty ; rdfs:label "claims" ; rdfs:range indicium:Claim ; skos:definition "All Claim entities in this document." ; skos:inScheme . indicium:datasets a owl:ObjectProperty ; rdfs:label "datasets" ; rdfs:range indicium:DataAsset ; skos:definition "All DataAsset entities in this document." ; skos:inScheme . indicium:decision_context a owl:DatatypeProperty ; rdfs:label "decision_context" ; rdfs:range [ a rdfs:Datatype ; owl:onDatatype xsd:string ; owl:withRestrictions ( [ xsd:pattern "^[a-zA-Z_][a-zA-Z0-9_]*\\.[a-zA-Z_][a-zA-Z0-9_]*$" ] ) ] ; skos:definition "ASTRA-style 'decision_id.option_id' tags scoping this evidence item to a specific methodological universe. Empty list = universally applicable." ; skos:inScheme . indicium:derived_from a owl:DatatypeProperty ; rdfs:label "derived_from" ; rdfs:range xsd:string ; skos:definition "Identifiers of source mapping(s) this was inferred from (cthoyt 2026-05-29). Modelled; not yet populated by direct lexical matches." ; skos:inScheme . indicium:edam_topics a owl:DatatypeProperty ; rdfs:label "edam_topics" ; rdfs:range xsd:anyURI ; skos:definition "EDAM topic IRIs (multivalued)." ; skos:inScheme . indicium:evidences a owl:ObjectProperty ; rdfs:label "evidences" ; rdfs:range indicium:Evidence ; skos:definition "All Evidence entities in this document." ; skos:inScheme . indicium:figures a owl:ObjectProperty ; rdfs:label "figures" ; rdfs:range indicium:Figure ; skos:definition "All Figure entities in this document." ; skos:inScheme . indicium:scripts a owl:ObjectProperty ; rdfs:label "scripts" ; rdfs:range indicium:Script ; skos:definition "All Script entities in this document." ; skos:inScheme . indicium:software_entities a owl:ObjectProperty ; rdfs:label "software_entities" ; rdfs:range indicium:SoftwareEntity ; skos:definition "All SoftwareEntity records in this document." ; skos:inScheme . indicium:sources a owl:ObjectProperty ; rdfs:label "sources" ; rdfs:range indicium:Source ; skos:definition "All Source entities in this document." ; skos:inScheme . indicium:sssom_mappings a owl:ObjectProperty ; rdfs:label "sssom_mappings" ; rdfs:range indicium:SSSOMMapping ; skos:definition "SSSOM term mappings carried by this document." ; skos:inScheme . doco:Figure a owl:Class ; rdfs:label "figure" ; rdfs:subClassOf indicium:SourceType . indicium:DatasetType a owl:Class ; rdfs:label "DatasetType" ; owl:unionOf ( dcat:Dataset dcat:Dataset dcat:Dataset dcat:Dataset dcat:Dataset dcat:Dataset dcat:Dataset ) ; skos:definition "Content-type classification of data artefacts in scholarly publications. Values map to dcat:Dataset; the enum value conveys the domain/format category of the data." ; skos:inScheme ; linkml:permissible_values dcat:Dataset . indicium:FragmentSelector a owl:Class ; rdfs:label "FragmentSelector" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:frag_value ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:frag_page ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:frag_value ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:frag_value ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:frag_page ], [ a owl:Restriction ; owl:allValuesFrom xsd:integer ; owl:onProperty indicium:frag_page ] ; skos:definition "W3C FragmentSelector for PDF page location." ; skos:exactMatch oa:FragmentSelector ; skos:inScheme . indicium:ScriptType a owl:Class ; rdfs:label "ScriptType" ; owl:unionOf ( fabio:ComputerProgram fabio:ComputerProgram fabio:ComputerProgram fabio:ComputerProgram fabio:ComputerProgram fabio:ComputerProgram ) ; skos:definition "Role-based classification of code artefacts in scholarly publications. All values map to fabio:ComputerProgram; the enum value itself conveys the functional role within the paper's methodology." ; skos:inScheme ; linkml:permissible_values fabio:ComputerProgram . indicium:accession a owl:DatatypeProperty ; rdfs:label "accession" ; skos:inScheme . indicium:asset_id a owl:DatatypeProperty ; rdfs:label "asset_id" ; skos:inScheme . indicium:astra_insight_ref a owl:DatatypeProperty ; rdfs:label "astra_insight_ref" ; skos:definition "Reference to the originating ASTRA insight in 'analysis_id/insight_id' format." ; skos:inScheme . indicium:bio_tools_id a owl:DatatypeProperty ; rdfs:label "bio_tools_id" ; skos:definition "bio.tools registry ID for cross-reference / federation." ; skos:inScheme . indicium:canonical_url a owl:DatatypeProperty ; rdfs:label "canonical_url" ; rdfs:range xsd:anyURI ; skos:definition "Canonical homepage / source URL of the software entity." ; skos:inScheme . indicium:caption a owl:DatatypeProperty ; rdfs:label "caption" ; skos:inScheme . indicium:claim_status a owl:ObjectProperty ; rdfs:label "claim_status" ; rdfs:range indicium:ClaimStatus ; skos:inScheme . indicium:claim_type a owl:ObjectProperty ; rdfs:label "claim_type" ; rdfs:range indicium:ClaimType ; skos:inScheme . indicium:commit_sha a owl:DatatypeProperty ; rdfs:label "commit_sha" ; skos:inScheme . indicium:context a owl:DatatypeProperty ; rdfs:label "context" ; skos:inScheme . indicium:data_format a owl:DatatypeProperty ; rdfs:label "data_format" ; skos:inScheme . indicium:dataset_type a owl:ObjectProperty ; rdfs:label "dataset_type" ; rdfs:range indicium:DatasetType ; skos:inScheme . indicium:doi a owl:DatatypeProperty ; rdfs:label "doi" ; skos:definition "DOI of this Source (paper, dataset, preprint). String form, no `doi:` prefix; canonical IRI is `https://doi.org/`. Distinct from generic `identifier` so adapters can target it unambiguously." ; skos:inScheme . indicium:domain_qualifier a owl:DatatypeProperty ; rdfs:label "domain_qualifier" ; rdfs:range [ a rdfs:Datatype ; owl:intersectionOf ( xsd:string [ a rdfs:Datatype ; owl:onDatatype xsd:string ; owl:withRestrictions ( [ xsd:pattern "^[a-z][a-z0-9_]*$" ] ) ] ) ] ; skos:definition "Open-vocabulary qualifier contributed by a DomainAdapter (indicium-adapters), e.g. 'aligned_with' or 'differentially_expressed_in'. This is NOT the closed Bucur SuperPattern — values are snake_case domain terms. A Claim must carry at least one of {qualifier, domain_qualifier} (enforced by the supplemental QualifierPresenceShape, since `qualifier` itself is no longer required at the slot level)." ; skos:inScheme . indicium:eco_code a owl:ObjectProperty ; rdfs:label "eco_code" ; rdfs:range indicium:EcoCodeAsbSubset ; skos:definition "ASB-subset ECO classification of this evidence line. Carries an ECO IRI via the enum's `meaning`. Coexists with `evidence_type` (broader, lifecycle-oriented): `eco_code` is the canonical ASB-emitted vocabulary, `evidence_type` remains for back-compat." ; skos:inScheme . indicium:edam_operation a owl:DatatypeProperty ; rdfs:label "edam_operation" ; rdfs:range xsd:anyURI ; skos:definition "EDAM operation IRI (e.g. http://edamontology.org/operation_3215)." ; skos:inScheme . indicium:evidence_type a owl:ObjectProperty ; rdfs:label "evidence_type" ; rdfs:range indicium:EvidenceType ; skos:inScheme . indicium:figure_id a owl:DatatypeProperty ; rdfs:label "figure_id" ; skos:inScheme . indicium:figure_type a owl:ObjectProperty ; rdfs:label "figure_type" ; rdfs:range indicium:FigureType ; skos:inScheme . indicium:frag_page a owl:DatatypeProperty ; rdfs:label "frag_page" ; rdfs:range xsd:integer ; skos:inScheme . indicium:frag_value a owl:DatatypeProperty ; rdfs:label "frag_value" ; skos:inScheme . indicium:from_claim a owl:ObjectProperty ; rdfs:label "from_claim" ; rdfs:range indicium:Claim ; skos:inScheme . indicium:language a owl:DatatypeProperty ; rdfs:label "language" ; skos:inScheme . indicium:license_id a owl:DatatypeProperty ; rdfs:label "license_id" ; skos:inScheme . indicium:mapping_justification a owl:DatatypeProperty ; rdfs:label "mapping_justification" ; rdfs:range xsd:string ; skos:definition "SEMAPV justification (e.g. semapv:LexicalMatching)." ; skos:inScheme . indicium:media_type a owl:DatatypeProperty ; rdfs:label "media_type" ; skos:inScheme . indicium:n_samples a owl:DatatypeProperty ; rdfs:label "n_samples" ; rdfs:range xsd:integer ; skos:inScheme . indicium:object a owl:DatatypeProperty ; rdfs:label "object" ; skos:inScheme . indicium:object_id a owl:DatatypeProperty ; rdfs:label "object_id" ; rdfs:range xsd:string ; skos:definition "SSSOM object term (CURIE/IRI)." ; skos:inScheme . indicium:object_label a owl:DatatypeProperty ; rdfs:label "object_label" ; rdfs:range xsd:string ; skos:inScheme . indicium:of_dataset a owl:ObjectProperty ; rdfs:label "of_dataset" ; rdfs:range indicium:DataAsset ; skos:inScheme . indicium:of_figure a owl:ObjectProperty ; rdfs:label "of_figure" ; rdfs:range indicium:Figure ; skos:inScheme . indicium:of_script a owl:ObjectProperty ; rdfs:label "of_script" ; rdfs:range indicium:Script ; skos:inScheme . indicium:page a owl:DatatypeProperty ; rdfs:label "page" ; rdfs:range xsd:integer ; skos:inScheme . indicium:panel_label a owl:DatatypeProperty ; rdfs:label "panel_label" ; skos:inScheme . indicium:paragraph_id a owl:DatatypeProperty ; rdfs:label "paragraph_id" ; skos:definition "Stable per-paragraph identifier within the Source (e.g. the `id` attribute of a JATS `

` element, or an ASB-emitted `p-` synthetic id). Pairs with `Evidence.quote_location`." ; skos:inScheme . indicium:predicate a owl:DatatypeProperty ; rdfs:label "predicate" ; skos:altLabel "relation" ; skos:definition "Spec-required name for the CiTO/SEPIO predicate. Shares slot_uri with `relation`; ASB adapter targets this name. Either may be set; they MUST agree if both are populated (enforced by downstream adapter, not at schema level)." ; skos:inScheme . indicium:predicate_id a owl:DatatypeProperty ; rdfs:label "predicate_id" ; rdfs:range xsd:string ; skos:definition "SSSOM mapping predicate (e.g. skos:closeMatch)." ; skos:inScheme . indicium:purpose a owl:DatatypeProperty ; rdfs:label "purpose" ; skos:inScheme . indicium:qualifier a owl:ObjectProperty ; rdfs:label "qualifier" ; rdfs:range indicium:SuperPatternQualifier ; skos:inScheme . indicium:quote a owl:DatatypeProperty ; rdfs:label "quote" ; skos:inScheme . indicium:quote_exact a owl:DatatypeProperty ; rdfs:label "quote_exact" ; skos:altLabel "quote" ; skos:definition "Spec-required name for the verbatim text excerpt supporting a claim. Aliases `quote`; ASB adapter targets this name. SHACL-level constraint that exactly one of {quote, quote_exact} is set is deferred to v1.7." ; skos:inScheme . indicium:quote_location a owl:DatatypeProperty ; rdfs:label "quote_location" ; rdfs:range xsd:string ; skos:definition "Free-form locator for the quote — paragraph id, XPath pointer, page-offset string, or W3C OA fragment IRI. Use when the structured `text_selector` / `fragment_selector` classes are overkill (e.g. the ASB adapter passes a `paragraph_id` string from its source paper)." ; skos:inScheme . indicium:relation a owl:DatatypeProperty ; rdfs:label "relation" ; skos:inScheme . indicium:repository a owl:DatatypeProperty ; rdfs:label "repository" ; skos:inScheme . indicium:repository_url a owl:DatatypeProperty ; rdfs:label "repository_url" ; skos:inScheme . indicium:script_id a owl:DatatypeProperty ; rdfs:label "script_id" ; skos:inScheme . indicium:script_type a owl:ObjectProperty ; rdfs:label "script_type" ; rdfs:range indicium:ScriptType ; skos:inScheme . indicium:source_excerpt a owl:DatatypeProperty ; rdfs:label "source_excerpt" ; skos:inScheme . indicium:source_task_kind a owl:ObjectProperty ; rdfs:label "source_task_kind" ; rdfs:range indicium:SourceTaskKind ; skos:definition "Provenance qualifier — how this Claim relates to the task in its source paper (reproduction / analysis / component_reconstruction / extension). Claim-level sibling of Evidence.workflow_coupling. Canonical replacement for the ASB-emitted asbext:source_task_kind extension field. Optional: producers omit it when a claim spans tasks of differing kinds." ; skos:inScheme . indicium:source_type a owl:ObjectProperty ; rdfs:label "source_type" ; rdfs:range indicium:SourceType ; skos:inScheme . indicium:subject a owl:DatatypeProperty ; rdfs:label "subject" ; skos:inScheme . indicium:subject_id a owl:DatatypeProperty ; rdfs:label "subject_id" ; rdfs:range xsd:string ; skos:definition "SSSOM subject (CURIE/IRI)." ; skos:inScheme . indicium:subject_label a owl:DatatypeProperty ; rdfs:label "subject_label" ; rdfs:range xsd:string ; skos:inScheme . indicium:super_pattern a owl:ObjectProperty ; rdfs:label "super_pattern" ; rdfs:range indicium:SuperPatternQualifier ; skos:altLabel "qualifier" ; skos:definition "Spec-required name for the Bucur SuperPattern qualifier. Aliases `qualifier`; the ASB adapter targets this name. Either may be set; both must agree if both are populated." ; skos:inScheme . indicium:superseded_by a owl:DatatypeProperty ; rdfs:label "superseded_by" ; rdfs:range xsd:anyURI ; skos:definition "URI of the Claim that supersedes this one. Must be set when claim_status is 'superseded'. Allows external Claim IRIs for cross-document lineage." ; skos:inScheme . indicium:supports_claim a owl:ObjectProperty ; rdfs:label "supports_claim" ; rdfs:range indicium:Claim ; skos:altLabel "for_claim" ; skos:definition "Claim evaluated by this evidence line. Uses SEPIO is_evidence_line_for, the inverse of has_evidence_line (proposition or assertion to evidence line). The historical JSON name does not encode supporting polarity: express supporting, disputing or inconclusive direction separately with sepio:0000183 on the evidence line. Semantic alias of the local for_claim link; when both are supplied they should identify the same Claim. The two JSON fields remain distinct and are not automatically copied." ; skos:inScheme . indicium:text_selector a owl:ObjectProperty ; rdfs:label "text_selector" ; rdfs:range indicium:TextQuoteSelector ; skos:inScheme . indicium:title a owl:DatatypeProperty ; rdfs:label "title" ; skos:inScheme . indicium:to_claim a owl:ObjectProperty ; rdfs:label "to_claim" ; rdfs:range indicium:Claim ; skos:inScheme . indicium:tqs_exact a owl:DatatypeProperty ; rdfs:label "tqs_exact" ; skos:inScheme . indicium:tqs_prefix a owl:DatatypeProperty ; rdfs:label "tqs_prefix" ; skos:inScheme . indicium:tqs_suffix a owl:DatatypeProperty ; rdfs:label "tqs_suffix" ; skos:inScheme . indicium:version a owl:DatatypeProperty ; rdfs:label "version" ; skos:definition "Version string (e.g. SemVer, git tag, release name)." ; skos:inScheme . indicium:workflow_coupling a owl:ObjectProperty ; rdfs:label "workflow_coupling" ; rdfs:range indicium:WorkflowCoupling ; skos:definition "Reproducibility qualifier — coupling of the workflow that produced this evidence (Suter et al. 2025). Optional; set by producers that know the workflow structure." ; skos:inScheme . indicium:xpath_pointer a owl:DatatypeProperty ; rdfs:label "xpath_pointer" ; skos:definition "XPath expression locating a node within the Source's structured representation (JATS XML, TEI, HTML). Alternative to `paragraph_id` when finer granularity is needed." ; skos:inScheme . ECO:0000006 a owl:Class ; rdfs:label "data", "experimental_evidence" ; rdfs:subClassOf indicium:EcoCodeAsbSubset, indicium:EvidenceType ; skos:definition "Generated by wet-lab experiment described in the paper." . ECO:0000302 a owl:Class ; rdfs:label "inference_from_background_knowledge", "knowledge" ; rdfs:subClassOf indicium:EcoCodeAsbSubset, indicium:EvidenceType ; skos:definition "LLM-asserted from prior knowledge (no direct paper trace)." . indicium:ClaimType a owl:Class ; rdfs:label "ClaimType" ; owl:unionOf ( ) ; skos:inScheme ; linkml:permissible_values , . indicium:DataAsset a owl:Class ; rdfs:label "DataAsset" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:n_samples ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:asset_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:n_samples ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:asset_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:asset_id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:allValuesFrom xsd:integer ; owl:onProperty indicium:n_samples ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:accession ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:data_format ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:dataset_type ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:repository ], [ a owl:Restriction ; owl:allValuesFrom xsd:boolean ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:accession ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:accession ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:data_format ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:data_format ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:dataset_type ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:repository ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:repository ], [ a owl:Restriction ; owl:allValuesFrom indicium:DatasetType ; owl:onProperty indicium:dataset_type ] ; skos:definition "A data artefact (dataset, supplementary file, or public repository deposit) from a scholarly publication. Carries content-type classification (dataset_type), file format, accession number, and hosting repository. Linked from Evidence.of_dataset when the evidence is grounded in data rather than a text passage." ; skos:exactMatch dcat:Dataset ; skos:inScheme . indicium:Figure a owl:Class ; rdfs:label "Figure" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:figure_id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:page ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:figure_id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:caption ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:figure_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:page ], [ a owl:Restriction ; owl:allValuesFrom indicium:FragmentSelector ; owl:onProperty indicium:fragment_selector ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:caption ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:media_type ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:caption ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:fragment_selector ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:figure_type ], [ a owl:Restriction ; owl:allValuesFrom xsd:integer ; owl:onProperty indicium:page ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:panel_label ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:media_type ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:media_type ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:allValuesFrom xsd:boolean ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:fragment_selector ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:figure_type ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:panel_label ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:panel_label ], [ a owl:Restriction ; owl:allValuesFrom indicium:FigureType ; owl:onProperty indicium:figure_type ] ; skos:definition "A figure, table, or other display item from a scholarly publication. Carries optional FaBiO sub-type classification (via figure_type) and provenance (source_doi). Linked from Evidence.of_figure when the evidence is grounded in a visual artefact rather than a text passage." ; skos:exactMatch doco:Figure ; skos:inScheme . indicium:Script a owl:Class ; rdfs:label "Script" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:purpose ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:script_type ], [ a owl:Restriction ; owl:allValuesFrom indicium:ScriptType ; owl:onProperty indicium:script_type ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:script_id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:language ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:purpose ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:purpose ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:script_type ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:script_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:script_id ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:content_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:language ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:language ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:repository_url ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:source_doi ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:repository_url ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:commit_sha ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:repository_url ], [ a owl:Restriction ; owl:allValuesFrom xsd:boolean ; owl:onProperty indicium:is_supplementary ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:commit_sha ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:commit_sha ] ; skos:definition "A code artefact (script, notebook, or pipeline) from a scholarly publication. Carries role classification (script_type), programming language, repository URL, and optional pinned commit. Linked from Evidence.of_script when the evidence is grounded in code rather than a text passage or figure." ; skos:exactMatch fabio:ComputerProgram ; skos:inScheme . ECO:0000033 a owl:Class ; rdfs:label "citation", "textual_quotation", "traceable_author_statement" ; rdfs:subClassOf indicium:EcoCodeAsbSubset, indicium:EvidenceType ; skos:definition "Author statement with explicit textual trace (DOI + paragraph).", "Verbatim quote from a paper. ASB default." . indicium:Source a owl:Class ; rdfs:label "Source" ; rdfs:subClassOf [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:title ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:title ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:license_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:title ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:xpath_pointer ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:license_id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:license_id ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:identifier ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:xpath_pointer ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:paragraph_id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:authors ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:xpath_pointer ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:doi ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:paragraph_id ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:authors ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:paragraph_id ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:doi ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:doi ] ; skos:definition "A cited source/paper with stable identity." ; skos:exactMatch fabio:Expression ; skos:inScheme . indicium:SourceTaskKind a owl:Class ; rdfs:label "SourceTaskKind" ; owl:unionOf ( ) ; skos:definition "Provenance qualifier on a Claim describing how the claim relates to the task carried out in its source paper. Claim-level sibling of WorkflowCoupling (Suter et al. 2025) in the reproducibility-provenance family, at claim↔source-task granularity rather than evidence-line↔workflow. Canonical replacement for the ASB-emitted asbext:source_task_kind extension field." ; skos:inScheme ; linkml:permissible_values , , , . indicium:WorkflowCoupling a owl:Class ; rdfs:label "WorkflowCoupling" ; owl:unionOf ( ) ; skos:definition "Reproducibility-bearing coupling of the workflow that produced an evidence line (Suter et al. 2025, DOI 10.1016/j.future.2025.107974). 'tight' = shared in-memory state, individual tasks not independently reproducible; 'loose' = file/API communication, individually reproducible." ; skos:inScheme ; linkml:permissible_values , , , . indicium:asserted_by a owl:DatatypeProperty ; rdfs:label "asserted_by" ; skos:definition "IRI or identifier of the agent (human ORCID, pipeline run ID, etc.) that asserted this item." ; skos:inScheme . indicium:confidence a owl:DatatypeProperty ; rdfs:label "confidence" ; rdfs:range xsd:float ; skos:inScheme . indicium:for_claim a owl:ObjectProperty ; rdfs:label "for_claim" ; rdfs:range indicium:Claim ; skos:definition "Indicium-local link from an evidence line to the Claim it evaluates. Semantic alias of supports_claim with a distinct local RDF predicate. When both fields are supplied they should identify the same Claim; neither field is automatically copied to the other." ; skos:inScheme . indicium:fragment_selector a owl:ObjectProperty ; rdfs:label "fragment_selector" ; rdfs:range indicium:FragmentSelector ; skos:inScheme . indicium:id a owl:DatatypeProperty ; rdfs:label "id" ; skos:inScheme . indicium:link_type a owl:ObjectProperty ; rdfs:label "link_type" ; rdfs:range indicium:LinkType ; skos:inScheme . indicium:of_source a owl:ObjectProperty ; rdfs:label "of_source" ; rdfs:range indicium:Source ; skos:inScheme . indicium:ClaimStatus a owl:Class ; rdfs:label "ClaimStatus" ; owl:unionOf ( ) ; skos:definition "Lifecycle state of a Claim." ; skos:inScheme ; linkml:permissible_values , , , , . indicium:EvidenceType a owl:Class ; rdfs:label "EvidenceType" ; owl:unionOf ( ECO:0000006 ECO:0000033 ECO:0000302 ECO:0000361 ECO:0000034 ) ; skos:inScheme ; linkml:permissible_values ECO:0000006, ECO:0000033, ECO:0000034, ECO:0000302, ECO:0000361 . indicium:SourceType a owl:Class ; rdfs:label "SourceType" ; owl:unionOf ( IAO:0000311 doco:Figure doco:Table IAO:0000536 fabio:ComputerProgram dcat:Dataset ) ; skos:inScheme ; linkml:permissible_values IAO:0000311, IAO:0000536, doco:Figure, doco:Table, fabio:ComputerProgram, dcat:Dataset . indicium:EcoCodeAsbSubset a owl:Class ; rdfs:label "EcoCodeAsbSubset" ; owl:unionOf ( ECO:0000033 ECO:0000251 ECO:0000305 ECO:0000302 ECO:0000204 ECO:0000006 ECO:0000213 ECO:0000033 ) ; skos:definition "ASB-emitted subset of the Evidence Code Ontology (ECO). The full ECO is large; ASB only emits these 8 values. Downstream consumers can treat this as a closed enum for ASB-sourced Evidence records." ; skos:inScheme ; linkml:permissible_values ECO:0000006, ECO:0000033, ECO:0000204, ECO:0000213, ECO:0000251, ECO:0000302, ECO:0000305 . indicium:content_url a owl:DatatypeProperty ; rdfs:label "content_url" ; skos:inScheme . indicium:is_supplementary a owl:DatatypeProperty ; rdfs:label "is_supplementary" ; rdfs:range xsd:boolean ; skos:inScheme . indicium:source_doi a owl:DatatypeProperty ; rdfs:label "source_doi" ; skos:inScheme . indicium:FigureType a owl:Class ; rdfs:label "FigureType" ; owl:unionOf ( fabio:DataPlot fabio:Graph fabio:Photograph fabio:Plate fabio:Diagram fabio:Flowchart fabio:Table fabio:Figure ) ; skos:definition "FaBiO-aligned classification of figure and display item types found in scholarly publications. Values map to FaBiO sub-classes of fabio:Figure and fabio:Table." ; skos:inScheme ; linkml:permissible_values fabio:DataPlot, fabio:Diagram, fabio:Figure, fabio:Flowchart, fabio:Graph, fabio:Photograph, fabio:Plate, fabio:Table . fabio:ComputerProgram a owl:Class ; rdfs:label "analysis", "code", "generic", "notebook", "utility", "visualization", "workflow" ; rdfs:subClassOf indicium:ScriptType, indicium:SourceType . dcat:Dataset a owl:Class ; rdfs:label "data", "generic", "image_stack", "model", "network", "sequence", "spectral", "tabular" ; rdfs:subClassOf indicium:DatasetType, indicium:SourceType . indicium:Claim a owl:Class ; rdfs:label "Claim" ; rdfs:subClassOf [ a owl:Restriction ; owl:allValuesFrom indicium:SuperPatternQualifier ; owl:onProperty indicium:qualifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:qualifier ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:qualifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:asserted_by ], [ a owl:Restriction ; owl:allValuesFrom indicium:SuperPatternQualifier ; owl:onProperty indicium:super_pattern ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:subject ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:claim_status ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:subject ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:super_pattern ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:context ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:context ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:asserted_by ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:asserted_by ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:claim_type ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:claim_status ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:subject ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:super_pattern ], [ a owl:Restriction ; owl:allValuesFrom [ a rdfs:Datatype ; owl:intersectionOf ( xsd:string [ a rdfs:Datatype ; owl:onDatatype xsd:string ; owl:withRestrictions ( [ xsd:pattern "^[a-z][a-z0-9_]*$" ] ) ] ) ] ; owl:onProperty indicium:domain_qualifier ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:source_task_kind ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:superseded_by ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:source_excerpt ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:astra_insight_ref ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:domain_qualifier ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:context ], [ a owl:Restriction ; owl:allValuesFrom indicium:SourceTaskKind ; owl:onProperty indicium:source_task_kind ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:id ], [ a owl:Restriction ; owl:minCardinality 0 ; owl:onProperty indicium:predicate ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:relation ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:claim_type ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:relation ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:source_task_kind ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:superseded_by ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:source_excerpt ], [ a owl:Restriction ; owl:allValuesFrom indicium:ClaimStatus ; owl:onProperty indicium:claim_status ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:astra_insight_ref ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:source_excerpt ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:predicate ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:astra_insight_ref ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:domain_qualifier ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:id ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:predicate ], [ a owl:Restriction ; owl:allValuesFrom xsd:string ; owl:onProperty indicium:object ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:relation ], [ a owl:Restriction ; owl:maxCardinality 1 ; owl:onProperty indicium:object ], [ a owl:Restriction ; owl:allValuesFrom xsd:anyURI ; owl:onProperty indicium:superseded_by ], [ a owl:Restriction ; owl:allValuesFrom indicium:ClaimType ; owl:onProperty indicium:claim_type ], [ a owl:Restriction ; owl:minCardinality 1 ; owl:onProperty indicium:object ] ; skos:definition "A scientific claim using the Bucur 5-slot SuperPattern." ; skos:exactMatch asb:Claim ; skos:inScheme . indicium:identifier a owl:DatatypeProperty ; rdfs:label "identifier" ; skos:inScheme . indicium:LinkType a owl:Class ; rdfs:label "LinkType" ; owl:unionOf ( cito:supports cito:disputes cito:qualifies cito:citesForInformation cito:contradicts cito:refines cito:extends cito:agreesWith cito:disagreesWith cito:updates cito:corrects cito:usesDataFrom cito:usesMethodIn ) ; skos:inScheme ; linkml:permissible_values cito:agreesWith, cito:citesForInformation, cito:contradicts, cito:corrects, cito:disagreesWith, cito:disputes, cito:extends, cito:qualifies, cito:refines, cito:supports, cito:updates, cito:usesDataFrom, cito:usesMethodIn . indicium:SuperPatternQualifier a owl:Class ; rdfs:label "SuperPatternQualifier" ; owl:unionOf ( ) ; skos:definition "20-term Bucur et al. (K-CAP 2021) qualifier vocabulary." ; skos:inScheme ; linkml:permissible_values , , , , , , , , , , , , , , , , , , , . a owl:Ontology ; rdfs:label "indicium" ; dct:license "MIT" ; pav:version "2.0.0" ; skos:definition "Shared claim/evidence standard — ECO/CiTO/DoCO/FaBiO/SEPIO/PROV-O + Bucur SuperPattern." .